Content

In this page you can find list of materials taught in this course by topics. For each topic by clicking on lecture/practical you will be directed to corresponding pages. During the workshop follow the links in this page

Materials. 

1. Introduction 1: RNA (Slides)
2. Introduction 2: RNAseq (Slides) 
3. From reads to count 1: Quality control of raw reads (Slides, Lab)
4. From reads to count 2: Mapping (Slides, Lab)
5. From reads to count 3: Post-alignment quality-control (Slides, Lab)
6. From reads to count 4: Quantification (Slides, Lab)
7. Exploratory data analysis and data visualisation 1: Data preprocessing (Slides, Lab)
8. Exploratory data analysis and data visualisation 2: Annotation data (Lab)
9. Exploratory data analysis and data visualisation 3: Principal component analysis (Slides, Lab)
10. Exploratory data analysis and data visualisation 4: Hierarchical Clustering (Slides, Lab)
11. Differential Gene Expression (Slides, Lab)
12. Gene set analysis (Slides, Lab)
13.  Advanced topics 1: Advanced differential expression analysis  (Slides)
14.  Advanced topics 2: Online Repositories (Slides, Lab)
15.  Advanced topics 3: Reading Bioinformatics (Slides)
16.  Advanced topics 4: Pseudo-aligners (Slides, Lab)