Software
For this lesson you will need R and RStudio Desktop.
Download R from the R project website Links to an external site. and follow the instructions there to install the software.
Download RStudio Desktop IDE from the RStudio website Links to an external site. and follow the instructions there to install the software.
From within RStudio, install the Tidyverse Links to an external site. collection of R packages.
Data
The following files are used in this lesson:
The data is taken from the following study:
Simonetti, M., Zhang, N., Harbers, L. et al. COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance. Nat Commun 12, 3903 (2021). https://doi.org/10.1038/s41467-021-24078-9 Links to an external site.