Course modules

Introduction to Data Management Practices

Introduction to Data Management Practices
Module completed Module in progress Module locked
Introduction to Data Management Practices 66382    
  • A - Course syllabus Page
    A - Course syllabus A - Course syllabus
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  • A - Preparations for accepted participants Page
    A - Preparations for accepted participants A - Preparations for accepted participants
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  • A - Course schedule Page
    A - Course schedule A - Course schedule
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  • A - Course participation guide Page
    A - Course participation guide A - Course participation guide
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  • A - Course content licensing Page
    A - Course content licensing A - Course content licensing
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  • A - Introduction presentation External Url
    A - Introduction presentation A - Introduction presentation
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  • A - Wrap-up presentation External Url
    A - Wrap-up presentation A - Wrap-up presentation
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Open Science and FAIR

Open Science and FAIR
Module completed Module in progress Module locked
Open Science and FAIR 66380    
  • B - Module overview Page
    B - Module overview B - Module overview
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  • B - 1 Reasons for Open Science Page
    B - 1 Reasons for Open Science B - 1 Reasons for Open Science
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  • B - 2 FAIR Page
    B - 2 FAIR B - 2 FAIR
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  • B - 3 The political landscape Page
    B - 3 The political landscape B - 3 The political landscape
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  • B - Slides Page
    B - Slides B - Slides
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  • B - Module licensing Page
    B - Module licensing B - Module licensing
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Data Management Plans

Data Management Plans
Module completed Module in progress Module locked
Data Management Plans 66379    
  • C - Module overview Page
    C - Module overview C - Module overview
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • C - 1 Introduction to data management planning Page
    C - 1 Introduction to data management planning C - 1 Introduction to data management planning
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  • C - 2 Exercise: Write a DMP (part 1) Page
    C - 2 Exercise: Write a DMP (part 1) C - 2 Exercise: Write a DMP (part 1)
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • C - 3 Exercise: Write a DMP (part 2) Page
    C - 3 Exercise: Write a DMP (part 2) C - 3 Exercise: Write a DMP (part 2)
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • C - Setup Page
    C - Setup C - Setup
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  • C - Module licensing Page
    C - Module licensing C - Module licensing
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Metadata

Metadata
Module completed Module in progress Module locked
Metadata 66378    
  • D - Module overview Page
    D - Module overview D - Module overview
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  • D - 1 What is the problem? Page
    D - 1 What is the problem? D - 1 What is the problem?
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  • D - 2 Controlled vocabularies & ontologies Page
    D - 2 Controlled vocabularies & ontologies D - 2 Controlled vocabularies & ontologies
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  • D - 3 Metadata standards Page
    D - 3 Metadata standards D - 3 Metadata standards
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  • D - 4 Data dictionary Page
    D - 4 Data dictionary D - 4 Data dictionary
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  • D - 5 Finding ontologies Page
    D - 5 Finding ontologies D - 5 Finding ontologies
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  • D - Setup Page
    D - Setup D - Setup
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  • D - Module licensing Page
    D - Module licensing D - Module licensing
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Data organisation practices

Data organisation practices
Module completed Module in progress Module locked
Data organisation practices 66377    
  • E - Module overview Page
    E - Module overview E - Module overview
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  • E - 1 Data storage and processing Page
    E - 1 Data storage and processing E - 1 Data storage and processing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • E - 2 Organising files and folders Page
    E - 2 Organising files and folders E - 2 Organising files and folders
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • E - 3 Structuring tabular data in spreadsheets Page
    E - 3 Structuring tabular data in spreadsheets E - 3 Structuring tabular data in spreadsheets
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • E - 4 Data entry and validation Page
    E - 4 Data entry and validation E - 4 Data entry and validation
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • E - 5 Exporting data from spreadsheets Page
    E - 5 Exporting data from spreadsheets E - 5 Exporting data from spreadsheets
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • E - Setup Page
    E - Setup E - Setup
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  • E - Module licensing Page
    E - Module licensing E - Module licensing
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Cleaning tabular data with OpenRefine

Cleaning tabular data with OpenRefine
Module completed Module in progress Module locked
Cleaning tabular data with OpenRefine 66376    
  • F - Module overview Page
    F - Module overview F - Module overview
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  • F - 1 Introduction Page
    F - 1 Introduction F - 1 Introduction
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  • F - 2 Working with OpenRefine Page
    F - 2 Working with OpenRefine F - 2 Working with OpenRefine
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - 3 Filtering and Sorting with OpenRefine Page
    F - 3 Filtering and Sorting with OpenRefine F - 3 Filtering and Sorting with OpenRefine
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - 4 Examining Numbers in OpenRefine Page
    F - 4 Examining Numbers in OpenRefine F - 4 Examining Numbers in OpenRefine
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - 5 Using scripts Page
    F - 5 Using scripts F - 5 Using scripts
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - 6 Exporting and Saving Data from OpenRefine Page
    F - 6 Exporting and Saving Data from OpenRefine F - 6 Exporting and Saving Data from OpenRefine
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - 7 Transforming and Selecting a Subset of the Data Page
    F - 7 Transforming and Selecting a Subset of the Data F - 7 Transforming and Selecting a Subset of the Data
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - 8 Other Resources in OpenRefine Page
    F - 8 Other Resources in OpenRefine F - 8 Other Resources in OpenRefine
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - Setup Page
    F - Setup F - Setup
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • F - Module licensing Page
    F - Module licensing F - Module licensing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Repository submissions

Repository submissions
Module completed Module in progress Module locked
Repository submissions 66375    
  • G - Module overview Page
    G - Module overview G - Module overview
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • G - 1 Introduction to repository submission Page
    G - 1 Introduction to repository submission G - 1 Introduction to repository submission
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • G - 2 Exercise - EBI Repository Wizard Page
    G - 2 Exercise - EBI Repository Wizard G - 2 Exercise - EBI Repository Wizard
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • G - 3 How to submit to ENA repository Page
    G - 3 How to submit to ENA repository G - 3 How to submit to ENA repository
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • G - 4 Exercise - submission to ENA Page
    G - 4 Exercise - submission to ENA G - 4 Exercise - submission to ENA
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • G - Setup Page
    G - Setup G - Setup
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • G - Module licensing Page
    G - Module licensing G - Module licensing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Versioning of data and code using Git

Versioning of data and code using Git
Module completed Module in progress Module locked
Versioning of data and code using Git 66659    
  • H - Module overview Page
    H - Module overview H - Module overview
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • H - 1 Version control systems Page
    H - 1 Version control systems H - 1 Version control systems
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • H - 2 Setting up versioning on the web Page
    H - 2 Setting up versioning on the web H - 2 Setting up versioning on the web
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • H - 3 Setting up versioning on your computer Page
    H - 3 Setting up versioning on your computer H - 3 Setting up versioning on your computer
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • H - 4 Collaboration with version control Page
    H - 4 Collaboration with version control H - 4 Collaboration with version control
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • H - Setup Page
    H - Setup H - Setup
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • H - Module licensing Page
    H - Module licensing H - Module licensing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Introduction to scripted analysis with R

Introduction to scripted analysis with R
Module completed Module in progress Module locked
Introduction to scripted analysis with R 66799    
  • I - Module overview Page
    I - Module overview I - Module overview
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - 1 Introducing R and RStudio IDE Page
    I - 1 Introducing R and RStudio IDE I - 1 Introducing R and RStudio IDE
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - 2 R Basics Page
    I - 2 R Basics I - 2 R Basics
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - 3 R Basics continued - factors and data frames Page
    I - 3 R Basics continued - factors and data frames I - 3 R Basics continued - factors and data frames
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - 4 Aggregating and Analyzing Data with dplyr Page
    I - 4 Aggregating and Analyzing Data with dplyr I - 4 Aggregating and Analyzing Data with dplyr
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - 5 Data Visualization with ggplot2 Page
    I - 5 Data Visualization with ggplot2 I - 5 Data Visualization with ggplot2
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - 6 Exercises Page
    I - 6 Exercises I - 6 Exercises
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - Setup Page
    I - Setup I - Setup
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • I - Module licensing Page
    I - Module licensing I - Module licensing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
 
minimum score must view must submit must contribute