Course modules

Introduction to Data Management Practices

Introduction to Data Management Practices Introduction to Data Management Practices

A - Course syllabus Page

A - Course syllabus A - Course syllabus 1

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A - Preparations for accepted participants Page

A - Preparations for accepted participants A - Preparations for accepted participants 2

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A - Course schedule Page

A - Course schedule A - Course schedule 3

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A - Course participation guide Page

A - Course participation guide A - Course participation guide 4

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A - Course content licensing Page

A - Course content licensing A - Course content licensing 5

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A - Introduction presentation External Url

A - Introduction presentation A - Introduction presentation 6

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A - Wrap-up presentation External Url

A - Wrap-up presentation A - Wrap-up presentation 7

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Open Science and FAIR

Open Science and FAIR Open Science and FAIR

B - Module overview Page

B - Module overview B - Module overview 1

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B - 1 Reasons for Open Science Page

B - 1 Reasons for Open Science B - 1 Reasons for Open Science 2

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B - 2 FAIR Page

B - 2 FAIR B - 2 FAIR 3

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B - 3 The political landscape Page

B - 3 The political landscape B - 3 The political landscape 4

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B - Slides Page

B - Slides B - Slides 5

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B - Module licensing Page

B - Module licensing B - Module licensing 6

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Data Management Plans

Data Management Plans Data Management Plans

C - Module overview Page

C - Module overview C - Module overview 1

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C - 1 Introduction to data management planning Page

C - 1 Introduction to data management planning C - 1 Introduction to data management planning 2

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C - 2 Exercise: Write a DMP (part 1) Page

C - 2 Exercise: Write a DMP (part 1) C - 2 Exercise: Write a DMP (part 1) 3

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C - 3 Exercise: Write a DMP (part 2) Page

C - 3 Exercise: Write a DMP (part 2) C - 3 Exercise: Write a DMP (part 2) 4

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C - Setup Page

C - Setup C - Setup 5

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C - Module licensing Page

C - Module licensing C - Module licensing 6

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Metadata

Metadata Metadata

D - Module overview Page

D - Module overview D - Module overview 1

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D - 1 What is the problem? Page

D - 1 What is the problem? D - 1 What is the problem? 2

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D - 2 Controlled vocabularies & ontologies Page

D - 2 Controlled vocabularies & ontologies D - 2 Controlled vocabularies & ontologies 3

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D - 3 Metadata standards Page

D - 3 Metadata standards D - 3 Metadata standards 4

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D - 4 Data dictionary Page

D - 4 Data dictionary D - 4 Data dictionary 5

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D - 5 Finding ontologies Page

D - 5 Finding ontologies D - 5 Finding ontologies 6

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D - Setup Page

D - Setup D - Setup 7

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D - Module licensing Page

D - Module licensing D - Module licensing 8

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Data organisation practices

Data organisation practices Data organisation practices

E - Module overview Page

E - Module overview E - Module overview 1

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E - 1 Data storage and processing Page

E - 1 Data storage and processing E - 1 Data storage and processing 2

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E - 2 Organising files and folders Page

E - 2 Organising files and folders E - 2 Organising files and folders 3

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E - 3 Structuring tabular data in spreadsheets Page

E - 3 Structuring tabular data in spreadsheets E - 3 Structuring tabular data in spreadsheets 4

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E - 4 Data entry and validation Page

E - 4 Data entry and validation E - 4 Data entry and validation 5

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E - 5 Exporting data from spreadsheets Page

E - 5 Exporting data from spreadsheets E - 5 Exporting data from spreadsheets 6

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E - Setup Page

E - Setup E - Setup 7

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E - Module licensing Page

E - Module licensing E - Module licensing 8

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Cleaning tabular data with OpenRefine

Cleaning tabular data with OpenRefine Cleaning tabular data with OpenRefine

F - Module overview Page

F - Module overview F - Module overview 1

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F - 1 Introduction Page

F - 1 Introduction F - 1 Introduction 2

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F - 2 Working with OpenRefine Page

F - 2 Working with OpenRefine F - 2 Working with OpenRefine 3

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F - 3 Filtering and Sorting with OpenRefine Page

F - 3 Filtering and Sorting with OpenRefine F - 3 Filtering and Sorting with OpenRefine 4

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F - 4 Examining Numbers in OpenRefine Page

F - 4 Examining Numbers in OpenRefine F - 4 Examining Numbers in OpenRefine 5

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F - 5 Using scripts Page

F - 5 Using scripts F - 5 Using scripts 6

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F - 6 Exporting and Saving Data from OpenRefine Page

F - 6 Exporting and Saving Data from OpenRefine F - 6 Exporting and Saving Data from OpenRefine 7

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F - 7 Transforming and Selecting a Subset of the Data Page

F - 7 Transforming and Selecting a Subset of the Data F - 7 Transforming and Selecting a Subset of the Data 8

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F - 8 Other Resources in OpenRefine Page

F - 8 Other Resources in OpenRefine F - 8 Other Resources in OpenRefine 9

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F - Setup Page

F - Setup F - Setup 10

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F - Module licensing Page

F - Module licensing F - Module licensing 11

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Repository submissions

Repository submissions Repository submissions

G - Module overview Page

G - Module overview G - Module overview 7

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G - 1 Introduction to repository submission Page

G - 1 Introduction to repository submission G - 1 Introduction to repository submission 8

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G - 2 Exercise - EBI Repository Wizard Page

G - 2 Exercise - EBI Repository Wizard G - 2 Exercise - EBI Repository Wizard 9

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G - 3 How to submit to ENA repository Page

G - 3 How to submit to ENA repository G - 3 How to submit to ENA repository 10

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G - 4 Exercise - submission to ENA Page

G - 4 Exercise - submission to ENA G - 4 Exercise - submission to ENA 11

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G - Setup Page

G - Setup G - Setup 12

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G - Module licensing Page

G - Module licensing G - Module licensing 13

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Versioning of data and code using Git

Versioning of data and code using Git Versioning of data and code using Git

H - Module overview Page

H - Module overview H - Module overview 1

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H - 1 Version control systems Page

H - 1 Version control systems H - 1 Version control systems 2

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H - 2 Setting up versioning on the web Page

H - 2 Setting up versioning on the web H - 2 Setting up versioning on the web 3

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H - 3 Setting up versioning on your computer Page

H - 3 Setting up versioning on your computer H - 3 Setting up versioning on your computer 4

wiki_page 340118 0

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H - 4 Collaboration with version control Page

H - 4 Collaboration with version control H - 4 Collaboration with version control 5

wiki_page 340119 0

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H - Setup Page

H - Setup H - Setup 6

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H - Module licensing Page

H - Module licensing H - Module licensing 7

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Introduction to scripted analysis with R

Introduction to scripted analysis with R Introduction to scripted analysis with R

I - Module overview Page

I - Module overview I - Module overview 1

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I - 1 Introducing R and RStudio IDE Page

I - 1 Introducing R and RStudio IDE I - 1 Introducing R and RStudio IDE 2

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I - 2 R Basics Page

I - 2 R Basics I - 2 R Basics 3

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I - 3 R Basics continued - factors and data frames Page

I - 3 R Basics continued - factors and data frames I - 3 R Basics continued - factors and data frames 4

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I - 4 Aggregating and Analyzing Data with dplyr Page

I - 4 Aggregating and Analyzing Data with dplyr I - 4 Aggregating and Analyzing Data with dplyr 5

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I - 5 Data Visualization with ggplot2 Page

I - 5 Data Visualization with ggplot2 I - 5 Data Visualization with ggplot2 6

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I - 6 Exercises Page

I - 6 Exercises I - 6 Exercises 7

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I - Setup Page

I - Setup I - Setup 8

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I - Module licensing Page

I - Module licensing I - Module licensing 9

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete