Course modules

Introduction to Data Management Practices

Introduction to Data Management Practices Introduction to Data Management Practices

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A - Course syllabus A - Course syllabus 1

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A - Preparations for accepted participants A - Preparations for accepted participants 2

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A - Course schedule A - Course schedule 3

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A - Course participation guide A - Course participation guide 4

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A - Course content licensing A - Course content licensing 5

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External URL

A - Introduction presentation A - Introduction presentation 6

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External URL

A - Wrap-up presentation A - Wrap-up presentation 7

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Open Science and FAIR

Open Science and FAIR Open Science and FAIR

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B - Module overview B - Module overview 1

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B - 1 Reasons for Open Science B - 1 Reasons for Open Science 2

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B - 2 FAIR B - 2 FAIR 3

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B - 3 The political landscape B - 3 The political landscape 4

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B - Slides B - Slides 5

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B - Module licensing B - Module licensing 6

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Data Management Plans

Data Management Plans Data Management Plans

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C - Module overview C - Module overview 1

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C - 1 Introduction to data management planning C - 1 Introduction to data management planning 2

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C - 2 Exercise: Write a DMP (part 1) C - 2 Exercise: Write a DMP (part 1) 3

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C - 3 Exercise: Write a DMP (part 2) C - 3 Exercise: Write a DMP (part 2) 4

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C - Setup C - Setup 5

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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C - Module licensing C - Module licensing 6

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Metadata

Metadata Metadata

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D - Module overview D - Module overview 1

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D - 1 What is the problem? D - 1 What is the problem? 2

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D - 2 Controlled vocabularies & ontologies D - 2 Controlled vocabularies & ontologies 3

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D - 3 Metadata standards D - 3 Metadata standards 4

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D - 4 Data dictionary D - 4 Data dictionary 5

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D - 5 Finding ontologies D - 5 Finding ontologies 6

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D - Setup D - Setup 7

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D - Module licensing D - Module licensing 8

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Data organisation practices

Data organisation practices Data organisation practices

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E - Module overview E - Module overview 1

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E - 1 Data storage and processing E - 1 Data storage and processing 2

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E - 2 Organising files and folders E - 2 Organising files and folders 3

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E - 3 Structuring tabular data in spreadsheets E - 3 Structuring tabular data in spreadsheets 4

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E - 4 Data entry and validation E - 4 Data entry and validation 5

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E - 5 Exporting data from spreadsheets E - 5 Exporting data from spreadsheets 6

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E - Setup E - Setup 7

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E - Module licensing E - Module licensing 8

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Cleaning tabular data with OpenRefine

Cleaning tabular data with OpenRefine Cleaning tabular data with OpenRefine

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F - Module overview F - Module overview 1

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F - 1 Introduction F - 1 Introduction 2

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F - 2 Working with OpenRefine F - 2 Working with OpenRefine 3

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F - 3 Filtering and Sorting with OpenRefine F - 3 Filtering and Sorting with OpenRefine 4

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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F - 4 Examining Numbers in OpenRefine F - 4 Examining Numbers in OpenRefine 5

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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F - 5 Using scripts F - 5 Using scripts 6

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F - 6 Exporting and Saving Data from OpenRefine F - 6 Exporting and Saving Data from OpenRefine 7

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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F - 7 Transforming and Selecting a Subset of the Data F - 7 Transforming and Selecting a Subset of the Data 8

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F - 8 Other Resources in OpenRefine F - 8 Other Resources in OpenRefine 9

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F - Setup F - Setup 10

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F - Module licensing F - Module licensing 11

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Repository submissions

Repository submissions Repository submissions

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G - Module overview G - Module overview 7

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G - 1 Introduction to repository submission G - 1 Introduction to repository submission 8

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G - 2 Exercise - EBI Repository Wizard G - 2 Exercise - EBI Repository Wizard 9

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G - 3 How to submit to ENA repository G - 3 How to submit to ENA repository 10

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G - 4 Exercise - submission to ENA G - 4 Exercise - submission to ENA 11

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G - Setup G - Setup 12

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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G - Module licensing G - Module licensing 13

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Versioning of data and code using Git

Versioning of data and code using Git Versioning of data and code using Git

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H - Module overview H - Module overview 1

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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H - 1 Version control systems H - 1 Version control systems 2

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H - 2 Setting up versioning on the web H - 2 Setting up versioning on the web 3

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H - 3 Setting up versioning on your computer H - 3 Setting up versioning on your computer 4

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H - 4 Collaboration with version control H - 4 Collaboration with version control 5

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H - Setup H - Setup 6

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H - Module licensing H - Module licensing 7

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Introduction to scripted analysis with R

Introduction to scripted analysis with R Introduction to scripted analysis with R

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I - Module overview I - Module overview 1

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I - 1 Introducing R and RStudio IDE I - 1 Introducing R and RStudio IDE 2

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I - 2 R Basics I - 2 R Basics 3

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I - 3 R Basics continued - factors and data frames I - 3 R Basics continued - factors and data frames 4

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I - 4 Aggregating and Analyzing Data with dplyr I - 4 Aggregating and Analyzing Data with dplyr 5

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I - 5 Data Visualization with ggplot2 I - 5 Data Visualization with ggplot2 6

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I - 6 Exercises I - 6 Exercises 7

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I - Setup I - Setup 8

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I - Module licensing I - Module licensing 9

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