Introduction to Biostatistics and Machine Learning

 Introduction to biostatistics and machine learning

National course open for PhD students, postdocs, researchers and other employees in need of biostatistical skills within all Swedish universities. The course is geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods. It would also suit those already applying biostatistical methods but have never got a chance to truly understand the basic statistical concepts, such as the commonly misinterpreted p-value.

 

Next course

• April 24th - 28th, 2023
• Trippelrummet (E10:1307-9), Navet, BMC, Husargatan 3, 751 23 Uppsala

 

 Application & Registration of interest

• Application is closed.
• If you want to register your interest and get notified next time we offer the course you can fill in this form.

 

 Important dates

• Application deadline: February 24th, 2023
• Confirmation to accepted students: March 10th, 2023
• Course days: April 24th - 28th, 2023

 

 Course content

• Probability theory
• Hypothesis testing and confidence intervals
• Resampling
• Linear regression methods
• Introduction to generalized linear models
• Model evaluation
• Unsupervised learning incl. clustering and dimension reduction methods
• Supervised learning incl. classification

More information can be found in last years course.

 

 Schedule

Preliminary course schedule can be found here.

 

 Education

In this course we focus on an active learning approach. The course participants are expected to do some pre-course reading and exercises, corresponding up to 40h studying. The education consists of teaching blocks alternating between mini-lectures, group discussions, live coding sessions etc.

 

Entry requirements

• Basic R programming skills (check your skills by taking our self-assessment test)
  • • using R as calculator
    • being able to work with vectors and matrices, incl. subsetting and matrices multiplication 
    • reading in data from .csv files, e.g. with read_csv()
    • printing top few rows or last few rows, e.g. with head() and tail()
    • using in-built summary functions such as sum(), min() or max()
    • being able to use documentation pages for R functions, e.g. with help() or ?()
    • using if else statements, writing simple loops and functions.
    • making simple plots (scatter plots, histograms), both with plot() and ggplot()
    • using tidyverse() for data transformations, e.g. filtering rows, selecting columns, creating new columns etc. 
    • being able to install CRAN packages e.g. with install.packages()
    • being familiar with R Markdown or Quatro format
• No prior biostatistical knowledge is assumed, only basic math skills (pre-course studying materials will be available upon course acceptance). 
• BYOL (bring your own laptop) with R and R Studio installed

 

 Selection criteria

• Due to limited space the course can accommodate maximum of 25 participants. If we receive more applications, participants will be selected based on several criteria. Selection criteria include correct entry requirements, motivation to attend the course as well as gender and geographical balance.
• NBIS prioritises academic participants (students, staff, affiliated researchers) in Sweden. We can accept participants from industry and/or outside Sweden if we have seats available and the requirements criteria are met.

 

 Fees

2000 SEK

includes lunches and coffee 

 

 Travel info

For travel information and hotel bookings see Travel Information page 

 

 Course credits

• Upon successful course completion, assessed based on active participation in all course session, we will issue a course certificate.

• Please note that we are not able to provide any formal university credits (högskolepoäng). Many universities, however, recognize the attendance in our courses, and award 1.5 HPs, corresponding to 40h of studying. It is up to participants to clarify and arrange credit transfer with the relevant university department.

 

 Teaching team

• Olga Dethlefsen «olga.dethlefsen@nbis.se»
• Eva Freyhult «eva.freyhult@nbis.se»
• Payam Emami «payam.emami@nbis.se»
• Julie Lorent «julie.lorent@nbis.se»
• Mun-Gwan Hong «mungwan.hong@nbis.se»
• Bengt Sennblad «bengt.sennblad@scilifelab.se»

 

 Contact us

• edu.ml-biostats@nbis.se
• olga.dethlefsen@nbis.se
• eva.freyhult@nbis.se