Course modules

Course Information

Course Information Course Information

Page

Contact information 3MK013 Contact information 3MK013 1

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Information on year 2 and re-exams in August 240325 Information on year 2 and re-exams in August 240325 2

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Previous Course evaluations Previous Course evaluations 3

wiki_page 943046 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Welcome to the course Welcome to the course 4

wiki_page 1048804 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Registration to Uppmax Registration to Uppmax 5

wiki_page 1042595 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Software installation Software installation 6

wiki_page 1048817 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Part 0 Introduction to Linux

Part 0 Introduction to Linux Part 0 Introduction to Linux

Context Module Subheader

Lectures 1

context_module_sub_header 1053038 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

24-03-25 Introduction to bioinformatics [Rubin] 24-03-25 Introduction to bioinformatics [Rubin] 2

wiki_page 1053031 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

24-03-26 Introduction to Linux [Rubin] 24-03-26 Introduction to Linux [Rubin] 3

wiki_page 1053032 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

24-03-27 Servers and computer clusters [Rubin] 24-03-27 Servers and computer clusters [Rubin] 4

wiki_page 1053033 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

24-03-28 Introduction to Bash scripting [Rubin] 24-03-28 Introduction to Bash scripting [Rubin] 5

wiki_page 1053034 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Context Module Subheader

Computer labs 6

context_module_sub_header 1053039 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

24-03-26 Linux 1: Introduction to LINUX [Rubin] 24-03-26 Linux 1: Introduction to LINUX [Rubin] 1 7

assignment 1053035 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

24-03-27 Linux 2: Servers and clusters [Rubin] 24-03-27 Linux 2: Servers and clusters [Rubin] 1 8

assignment 1053036 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

24-03-28 Linux 3: Bash scripting [Rubin] 24-03-28 Linux 3: Bash scripting [Rubin] 1 9

assignment 1053037 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Part 1 Microbial Evolution and Epidemiology

Part 1 Microbial Evolution and Epidemiology Part 1 Microbial Evolution and Epidemiology

Page

Microbial Evolution and Epidemiology - General information Microbial Evolution and Epidemiology - General information 1

wiki_page 896123 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Context Module Subheader

Lectures 2

context_module_sub_header 896124 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 1: Introduction to genomics and evolution MEE Lecture 1: Introduction to genomics and evolution 3

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

NGS 1: Analysis of modern sequencing data [Webster] NGS 1: Analysis of modern sequencing data [Webster] 4

wiki_page 1056846 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 2: Online resources MEE Lecture 2: Online resources 5

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 3: Bacterial genomics and horizontal gene transfers MEE Lecture 3: Bacterial genomics and horizontal gene transfers 6

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 4: Phylogenetic approaches to study evolution MEE Lecture 4: Phylogenetic approaches to study evolution 7

wiki_page 896128 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 5: Selective forces driving evolution MEE Lecture 5: Selective forces driving evolution 8

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 6: Introduction to Epidemiology MEE Lecture 6: Introduction to Epidemiology 9

wiki_page 896139 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 7: Measures of disease MEE Lecture 7: Measures of disease 10

wiki_page 896140 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 8: Descriptive epidemiology MEE Lecture 8: Descriptive epidemiology 11

wiki_page 896141 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 9: Observational and interventional studies MEE Lecture 9: Observational and interventional studies 12

wiki_page 896142 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 10: Sampling MEE Lecture 10: Sampling 13

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 11: Molecular epidemiology MEE Lecture 11: Molecular epidemiology 14

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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MEE Lecture 12: Bias MEE Lecture 12: Bias 15

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 13: Association, causality and attributable fraction MEE Lecture 13: Association, causality and attributable fraction 16

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Lecture 14: Epidemiology of infectious diseases MEE Lecture 14: Epidemiology of infectious diseases 17

wiki_page 896148 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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MEE Lecture 15: Applied epidemiology lecture MEE Lecture 15: Applied epidemiology lecture 18

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

MEE Q&A MEE Q&A 19

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Context Module Subheader

Computer Lab 20

context_module_sub_header 896131 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Mini-project - instructions Mini-project - instructions 21

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Assignment

Mini-project - presentation, hand-in Mini-project - presentation, hand-in 0 22

assignment 896133 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Applied epidemiology exercise Applied epidemiology exercise 0 24

assignment 896153 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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Previous exams Previous exams 25

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Seminar 4 Group B Discussion 2 (Poster).pdf Seminar 4 Group B Discussion 2 (Poster).pdf 26

attachment 1095747 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

Seminar 4, Group B, Discussion 1.pdf Seminar 4, Group B, Discussion 1.pdf 26

attachment 1095748 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Part 2 Antimicrobial drugs, development and resistance

Part 2 Antimicrobial drugs, development and resistance Part 2 Antimicrobial drugs, development and resistance

Page

Antimicrobial drugs, development and resistance - General information Antimicrobial drugs, development and resistance - General information 1

wiki_page 896154 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Examples of previous exam questions Examples of previous exam questions 2

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Context Module Subheader

LECTURES 3

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Discussion topic

Online discussions related to all lectures Online discussions related to all lectures 4

discussion_topic 896157 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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Zoom links for the Question times (Q&A) related to the lectures Zoom links for the Question times (Q&A) related to the lectures 5

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Page

Additional material related to lectures 03 to 06 Additional material related to lectures 03 to 06 6

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Context Module Subheader

Handouts of lectures 7

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Attachment

Introduction to the module 2024/04/26 Introduction to the module 2024/04/26 8

attachment 1075174 0

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Attachment

01. Antibiotics and Mechanisms 1_2024.pdf 01. Antibiotics and Mechanisms 1_2024.pdf 9

attachment 1073456 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

02. Antibiotics and Mechanisms_2 2024.pdf 02. Antibiotics and Mechanisms_2 2024.pdf 10

attachment 1073457 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

03. Mechanisms of antibiotic resistance - 2024/04/29 03. Mechanisms of antibiotic resistance - 2024/04/29 11

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Page

04. Ecology and evolution of antibiotic resistance - 2024/04/29 04. Ecology and evolution of antibiotic resistance - 2024/04/29 12

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Page

05. Dynamics of antibiotic resistance - 2024/05/02 05. Dynamics of antibiotic resistance - 2024/05/02 13

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06. Alternatives to antibiotics - 2024/05/02 06. Alternatives to antibiotics - 2024/05/02 14

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Attachment

07. Resistance Testing & Surveillance_2024.pdf 07. Resistance Testing & Surveillance_2024.pdf 15

attachment 1073458 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

08. Antifungal & Mtb drugs & resistance 2024.pdf 08. Antifungal & Mtb drugs & resistance 2024.pdf 16

attachment 1073459 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

09. Plasmids and Mobile genetic elements - 2024/05/07 09. Plasmids and Mobile genetic elements - 2024/05/07 17

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

10. Resistance in the hospital - 2024/05/07 10. Resistance in the hospital - 2024/05/07 18

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

11. Antiviral drugs - part 1 - 2024/05/13 11. Antiviral drugs - part 1 - 2024/05/13 19

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

12. ADME - 2024/05/13 12. ADME - 2024/05/13 20

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

SELECTED EQUATIONS Master Programme in Infection Biology.pdf SELECTED EQUATIONS Master Programme in Infection Biology.pdf 21

attachment 896174 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

13. PK and PKPD - 2024/05/15 13. PK and PKPD - 2024/05/15 22

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Page

14. Antiviral drugs - part 2 - 2024/05/16 14. Antiviral drugs - part 2 - 2024/05/16 23

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

15. Finding Antibiotic Targets 2024.pdf 15. Finding Antibiotic Targets 2024.pdf 24

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Odilorhabdin antibiotic film (for lecture 15) Odilorhabdin antibiotic film (for lecture 15) 25

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

16. Finding Starting Compounds_2024.pdf 16. Finding Starting Compounds_2024.pdf 26

attachment 1073473 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Attachment

17. H2L and L2CD 2024.pdf 17. H2L and L2CD 2024.pdf 27

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Attachment

18. TPP, Clinical trials and Economics_2024.pdf 18. TPP, Clinical trials and Economics_2024.pdf 28

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

19. Phage therapy - 2024/05/22 19. Phage therapy - 2024/05/22 29

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Attachment

20. Current Antibiotic Pipeline_2024.pdf 20. Current Antibiotic Pipeline_2024.pdf 30

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Context Module Subheader

SEMINARS 31

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Seminar 1 - AMR genes in the environment - 2024/05/06 Seminar 1 - AMR genes in the environment - 2024/05/06 32

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Discussion topic

Questions and discussion about Seminar 1 Questions and discussion about Seminar 1 33

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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Seminar 2 - AMR fitness and compensation - 2024/05/08 Seminar 2 - AMR fitness and compensation - 2024/05/08 34

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Discussion topic

Questions and discussion about Seminar 2 Questions and discussion about Seminar 2 35

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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Seminar 3 - Teixobactin, a new antibiotic - 2024/05/14 Seminar 3 - Teixobactin, a new antibiotic - 2024/05/14 36

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Discussion topic

Questions and discussion about Seminar 3 Questions and discussion about Seminar 3 37

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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Seminar 4. Antiviral drugs - 2024/05/23 Seminar 4. Antiviral drugs - 2024/05/23 39

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Discussion topic

Questions and discussion about Seminar 4 Questions and discussion about Seminar 4 40

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Context Module Subheader

EXERCISE PKPD 41

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Problem solving exercise: PK & PKPD - 2024/05/21 Problem solving exercise: PK & PKPD - 2024/05/21 42

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Discussion topic

Questions and discussion about Exercise PK & PKPD Questions and discussion about Exercise PK & PKPD 43

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Context Module Subheader

MINI SYMPOSIUM 44

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Information and guidelines for mini symposium assignments Information and guidelines for mini symposium assignments 45

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Page

Examples of written assignments and oral presentations from previous years Examples of written assignments and oral presentations from previous years 46

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Schedule for meetings with teachers 2024/05/06 Schedule for meetings with teachers 2024/05/06 47

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Schedule for Symposium days 2024/05/30 and 2024/05/31 Schedule for Symposium days 2024/05/30 and 2024/05/31 48

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Discussion topic

General discussion about the mini symposium General discussion about the mini symposium 49

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Context Module Subheader

Discusison groups for upload of research proposals and feedback 50

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Discussion topic

Discussion group 1 & group 2 Discussion group 1 & group 2 51

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Discussion topic

Discussion group 3 & group 4 Discussion group 3 & group 4 52

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Discussion topic

Discussion group 5 & group 6 Discussion group 5 & group 6 53

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Discussion topic

Discussion group 7 & group 8 Discussion group 7 & group 8 54

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Discussion topic

Discussion group 9 & group 10 Discussion group 9 & group 10 55

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Discussion topic

Discussion group 11 & group 12 Discussion group 11 & group 12 56

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Discussion topic

Discussion group 13, group 14 & group 15 Discussion group 13, group 14 & group 15 57

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Course modules

Course Information

Part 0 Introduction to Linux

Lectures 1

Computer labs 6

Part 1 Microbial Evolution and Epidemiology

Lectures 2

Computer Lab 20

Part 2 Antimicrobial drugs, development and resistance

LECTURES 3

Handouts of lectures 7

SEMINARS 31

EXERCISE PKPD 41

MINI SYMPOSIUM 44

Discusison groups for upload of research proposals and feedback 50