Course modules

GENERAL COURSE INFORMATION

GENERAL COURSE INFORMATION GENERAL COURSE INFORMATION

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Contact information 3MK000 Contact information 3MK000 1

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Page

Finding your way around campus Finding your way around campus 2

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Attachment

Map BMC.jpg Map BMC.jpg 3

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Attachment

Info Year 1 2024.pdf Info Year 1 2024.pdf 4

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Page

Course Zoom-links Course Zoom-links 5

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Attachment

Innate immunity_master 2024.pdf Innate immunity_master 2024.pdf 14

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Course evaluation and course report

Course evaluation and course report Course evaluation and course report

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Previous Course Reports and Summary of Course Evaluations, 3MK000 Previous Course Reports and Summary of Course Evaluations, 3MK000 1

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BACTERIOLOGY

BACTERIOLOGY BACTERIOLOGY

Context Module Subheader

Lectures 1

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Attachment

01. Introduction Bacteriology 2024.pdf 01. Introduction Bacteriology 2024.pdf 2

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Attachment

02. Infectious Organisms Bacteria & Phage 2024.pdf 02. Infectious Organisms Bacteria & Phage 2024.pdf 3

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Attachment

03. Pathogens & Surface structures 2024.pdf 03. Pathogens & Surface structures 2024.pdf 4

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Attachment

04. Regulation of virulence factors 2024.pdf 04. Regulation of virulence factors 2024.pdf 5

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Attachment

05. Epigenetic Regulation of virulence factors 2024.pdf 05. Epigenetic Regulation of virulence factors 2024.pdf 6

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Attachment

06. Two component systems 2024.pdf 06. Two component systems 2024.pdf 7

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Attachment

07. Quorum sensing 2024.pdf 07. Quorum sensing 2024.pdf 8

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Attachment

08. HGT of Virulence Factors 2024.pdf 08. HGT of Virulence Factors 2024.pdf 9

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Attachment

09. Defence against HGT 2024.pdf 09. Defence against HGT 2024.pdf 10

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Attachment

tracrRNA AND PAM in CRISPR.pdf tracrRNA AND PAM in CRISPR.pdf 11

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Attachment

10. Bacterial secretion systems 2024.pdf 10. Bacterial secretion systems 2024.pdf 12

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Page

Type VI film Type VI film 13

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Attachment

11. Survival in Hostile Environments 2024.pdf 11. Survival in Hostile Environments 2024.pdf 14

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Attachment

Heat Shock Minireview 1999.pdf Heat Shock Minireview 1999.pdf 15

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Heat Shock Minireview 2011.pdf Heat Shock Minireview 2011.pdf 16

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Attachment

12. Bacterial Adhesion 2024.pdf 12. Bacterial Adhesion 2024.pdf 17

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13. Bacterial Invasion 2024.pdf 13. Bacterial Invasion 2024.pdf 18

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Attachment

14. S.aureus & E. coli pathogenicity 2024.pdf 14. S.aureus & E. coli pathogenicity 2024.pdf 19

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Attachment

15. Genome-wide methods 1_2024.pdf 15. Genome-wide methods 1_2024.pdf 20

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16. Genome-wide methods 2_2024.pdf 16. Genome-wide methods 2_2024.pdf 21

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17. Pseudomonas & Tuberculosis Pathogenesis 2024.pdf 17. Pseudomonas & Tuberculosis Pathogenesis 2024.pdf 22

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18. The battle for iron 2024.pdf 18. The battle for iron 2024.pdf 23

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19. Biofilms 2024.pdf 19. Biofilms 2024.pdf 24

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20. Bacterial Toxins 2024.pdf 20. Bacterial Toxins 2024.pdf 25

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21. Bacterial bioweapons 2024.pdf 21. Bacterial bioweapons 2024.pdf 26

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Attachment

22. Murine and non-mammalian infection models 2024.pdf 22. Murine and non-mammalian infection models 2024.pdf 27

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23. Human microbiota & case studies 2024.pdf 23. Human microbiota & case studies 2024.pdf 28

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24. Evolution of virulence 2024.pdf 24. Evolution of virulence 2024.pdf 29

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Context Module Subheader

Seminars 30

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Page

Bacteriology Seminar 1; Pathogenicity islands Bacteriology Seminar 1; Pathogenicity islands 31

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Attachment

Study Questions Seminar 1 Pathogenicity Islands_2024.pdf Study Questions Seminar 1 Pathogenicity Islands_2024.pdf 33

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Attachment

1. Genomic Islands 2004 Nat Rev Mic.pdf 1. Genomic Islands 2004 Nat Rev Mic.pdf 34

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Attachment

2. H-NS Dorman 2007 Review.pdf 2. H-NS Dorman 2007 Review.pdf 35

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3. Lawrence 2005 HGT review.pdf 3. Lawrence 2005 HGT review.pdf 36

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4. H-NS Navarre 2016 Review.pdf 4. H-NS Navarre 2016 Review.pdf 37

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Page

Bacteriology Seminar 2; Oxidative stress Bacteriology Seminar 2; Oxidative stress 38

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Attachment

Study questions for seminar 2, Oxidative stress, 2024.pdf Study questions for seminar 2, Oxidative stress, 2024.pdf 40

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Attachment

1. Imlay, Nat Rev Microbiol 2013.pdf 1. Imlay, Nat Rev Microbiol 2013.pdf 41

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Fenton reaction.pdf Fenton reaction.pdf 42

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2. Winter et al., Nature 2010.pdf 2. Winter et al., Nature 2010.pdf 43

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Nature_Comment on Winter.pdf Nature_Comment on Winter.pdf 44

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nrmicro_Comment on Winter.pdf nrmicro_Comment on Winter.pdf 45

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Page

Bacteriology Seminar 3; Interkingdom signalling Bacteriology Seminar 3; Interkingdom signalling 46

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Attachment

Guide questions seminar 3_Interkingdom signalling_2024.pdf Guide questions seminar 3_Interkingdom signalling_2024.pdf 48

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Attachment

1. Nature Rev 2008.pdf 1. Nature Rev 2008.pdf 49

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2. mBio 2013 Streptococcus.pdf 2. mBio 2013 Streptococcus.pdf 50

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Context Module Subheader

Laborations 51

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Lab Manual 2024_06_28_TB.pdf Lab Manual 2024_06_28_TB.pdf 52

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Page

DNA sequence data files DNA sequence data files 53

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Attachment

gyrA.txt gyrA.txt 54

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Attachment

rpoB.txt rpoB.txt 55

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Attachment

Handout_sequencing.pdf Handout_sequencing.pdf 56

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Attachment

Bacteriology Labs Discussion 2024.pptx Bacteriology Labs Discussion 2024.pptx 57

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Context Module Subheader

Old Exam Questions in Bacteriology 58

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Attachment

Bacteriology Old Exam Questions 2017, 2018, 2019_Without answers.pdf Bacteriology Old Exam Questions 2017, 2018, 2019_Without answers.pdf 59

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Attachment

Bacteriology Exam 2017, 2018, 2019 + Possible answers.pdf Bacteriology Exam 2017, 2018, 2019 + Possible answers.pdf 60

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Attachment

Exam 2020 + Possible answers.pdf Exam 2020 + Possible answers.pdf 61

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Attachment

Exam 3MK000 Bacteriology_2021 10 29_+POSSIBLE ANSWERS.pdf Exam 3MK000 Bacteriology_2021 10 29_+POSSIBLE ANSWERS.pdf 62

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Attachment

3MK000 Bacteriology exam HT23.pdf 3MK000 Bacteriology exam HT23.pdf 63

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Attachment

Teaching goals_Bacteriology_3MK000_2024.pdf Teaching goals_Bacteriology_3MK000_2024.pdf 64

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IMMUNOLOGY

IMMUNOLOGY IMMUNOLOGY

Context Module Subheader

Information on the Immunology part of the course 2

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Attachment

Teaching goals_Immunology_3MK000_230907 MHU.docx Teaching goals_Immunology_3MK000_230907 MHU.docx 3

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Page

Dugga Multiple choice test information Dugga Multiple choice test information 4

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Attachment

Dugga Immunology, 201005.pdf Dugga Immunology, 201005.pdf 5

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Attachment

3MK000 Immunology Dugga HT23.pdf 3MK000 Immunology Dugga HT23.pdf 6

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Page

Previous exams Previous exams 8

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Page

Introduction to the immune system Introduction to the immune system 9

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Context Module Subheader

Lectures 10

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Attachment

Introduction 2024.pdf Introduction 2024.pdf 11

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Attachment

Antibodies Masters HT24 (Pejler) handouts.pdf Antibodies Masters HT24 (Pejler) handouts.pdf 19

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Attachment

B cells Master Infection ht24(GP)handouts.pdf B cells Master Infection ht24(GP)handouts.pdf 20

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Attachment

Proteases in Inflammation 2024 handouts.pdf Proteases in Inflammation 2024 handouts.pdf 21

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Attachment

Innate immunity_master 2024 new.pdf Innate immunity_master 2024 new.pdf 22

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Attachment

antigenpresenation 2024.pdf antigenpresenation 2024.pdf 23

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Attachment

T-cells step 1_master_HT24_handouts.pdf T-cells step 1_master_HT24_handouts.pdf 24

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Attachment

T-cells II & cytokines_master_HT24_handout.pdf T-cells II & cytokines_master_HT24_handout.pdf 25

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VIROLOGY

VIROLOGY VIROLOGY

Page

Information_Virology +(old exams) Information_Virology +(old exams) 1

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Context Module Subheader

Lectures (6 blocks: general virology, DNA viruses, RNA viruses, virus-host combat, macromolecular synthesis, cell growth control) 2

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Page

General virology (04/11-05/11) General virology (04/11-05/11) 3

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Page

DNA viruses (06/11-11/11) DNA viruses (06/11-11/11) 4

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Page

RNA viruses (12/11-15/11) RNA viruses (12/11-15/11) 5

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Page

Virus-host combat (02/12-03/12) Virus-host combat (02/12-03/12) 6

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Page

Macromolecular synthesis (03/12-09/12) Macromolecular synthesis (03/12-09/12) 7

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Page

Cell growth control (10/12-13/12) Cell growth control (10/12-13/12) 8

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Page

Encyclopedia of Life Sciences Encyclopedia of Life Sciences 9

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Discussion topic

Discussion about general virology, DNA & RNA viruses Discussion about general virology, DNA & RNA viruses 10

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Discussion topic

Discussion about virus-host combat, macromolecular synthesis, cell growth control. Discussion about virus-host combat, macromolecular synthesis, cell growth control. 11

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Context Module Subheader

Seminars 12

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Page

DNA viruses_Seminar (11/11) DNA viruses_Seminar (11/11) 13

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Assignment

DNA virus seminars_notes DNA virus seminars_notes 0.5 14

assignment 1029143 1

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Assignment

DNA virus seminars_presentation_PPTs DNA virus seminars_presentation_PPTs 0.5 15

assignment 1029144 1

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Page

RNA viruses_Seminar (15/11) RNA viruses_Seminar (15/11) 16

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Assignment

RNA virus seminars_notes RNA virus seminars_notes 0.5 17

assignment 1029146 1

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Assignment

RNA virus seminars_presentations_PPTs RNA virus seminars_presentations_PPTs 0.5 18

assignment 1029147 1

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Page

Strategy Seminars (SS)_general information Strategy Seminars (SS)_general information 19

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Page

SS1: Virus-host combat-Seminar_LITERATURE (10/01/2025) SS1: Virus-host combat-Seminar_LITERATURE (10/01/2025) 20

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Assignment

SS1: Presentation SS1: Presentation 1 21

assignment 1029150 1

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Assignment

SS1: Questions SS1: Questions 1 22

assignment 1029151 1

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Assignment

SS1: Summary SS1: Summary 1 23

assignment 1029152 1

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Page

SS2: Macromolecular synthesis-Seminar_LITERATURE (13/01/2025) SS2: Macromolecular synthesis-Seminar_LITERATURE (13/01/2025) 24

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Assignment

SS2: Presentation SS2: Presentation 1 25

assignment 1029154 1

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Assignment

SS2: Questions SS2: Questions 1 26

assignment 1029155 1

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Assignment

SS2: Summary SS2: Summary 1 27

assignment 1029156 1

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Page

SS3: Cell growth control-Seminar_LITERATURE (15/01/2025) SS3: Cell growth control-Seminar_LITERATURE (15/01/2025) 28

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Assignment

SS3: Presentation SS3: Presentation 1 29

assignment 1029158 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

SS3: Questions SS3: Questions 1 30

assignment 1029159 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

SS3: Summary SS3: Summary 1 31

assignment 1029160 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Context Module Subheader

Laborations 32

context_module_sub_header 1029161 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Information about Lab practicals (18/11-29/11) Information about Lab practicals (18/11-29/11) 33

wiki_page 1029162 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Presentation of Lab results (01/12) Presentation of Lab results (01/12) 2 34

assignment 1029163 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Assignment

Final Lab report (31/12/2023) Final Lab report (31/12/2023) 2 35

assignment 1029164 1

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Support and Resources for Students

Support and Resources for Students Support and Resources for Students

Context Module Subheader

New Student 1

context_module_sub_header 1029167 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Activating your student account Activating your student account 2

wiki_page 1029168 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Campus card Campus card 3

wiki_page 1029169 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

International Students - Housing and financing International Students - Housing and financing 4

wiki_page 1029170 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Context Module Subheader

University Resources 5

context_module_sub_header 1029171 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Support for Disabilities Support for Disabilities 6

wiki_page 1029172 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

IT Services for Students IT Services for Students 7

wiki_page 1029173 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Uppsala University Library Uppsala University Library 8

wiki_page 1029174 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Student Health Care Student Health Care 9

wiki_page 1029175 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Language Related Support Language Related Support 10

wiki_page 1029176 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

UU Career UU Career 11

wiki_page 1029177 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Context Module Subheader

Good to know in Uppsala 12

context_module_sub_header 1029178 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Health Care Services Health Care Services 13

wiki_page 1029179 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Student Nations Student Nations 14

wiki_page 1029180 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Study-Related Issues

Study-Related Issues Study-Related Issues

Page

Rules and Rights Rules and Rights 1

wiki_page 1029181 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Plagiarism and Cheating Plagiarism and Cheating 2

wiki_page 1029182 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Studying with Children Studying with Children 3

wiki_page 1029184 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Page

Studying Abroad Studying Abroad 4

wiki_page 1029185 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Course modules

GENERAL COURSE INFORMATION

Course evaluation and course report

BACTERIOLOGY

Lectures 1

Seminars 30

Laborations 51

Old Exam Questions in Bacteriology 58

IMMUNOLOGY

Information on the Immunology part of the course 2

Lectures 10

VIROLOGY

Lectures (6 blocks: general virology, DNA viruses, RNA viruses, virus-host combat, macromolecular synthesis, cell growth control) 2

Seminars 12

Laborations 32

Support and Resources for Students

New Student 1

University Resources 5

Good to know in Uppsala 12

Study-Related Issues