Course modules

Introduction to Data Management Practices

Introduction to Data Management Practices
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Introduction to Data Management Practices 66382  
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    A - Course syllabus A - Course syllabus
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    A - Preparations for accepted participants A - Preparations for accepted participants
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    A - Course schedule A - Course schedule
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    A - Course participation guide A - Course participation guide
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    A - Course content licensing A - Course content licensing
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  • External URL
    A - Introduction presentation A - Introduction presentation
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  • External URL
    A - Wrap-up presentation A - Wrap-up presentation
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Open Science and FAIR

Open Science and FAIR
Module completed Module in progress Module locked
Open Science and FAIR 66380  
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    B - Module overview B - Module overview
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    B - 1 Reasons for Open Science B - 1 Reasons for Open Science
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    B - 2 FAIR B - 2 FAIR
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    B - 3 The political landscape B - 3 The political landscape
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    B - Slides B - Slides
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    B - Module licensing B - Module licensing
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Data Management Plans

Data Management Plans
Module completed Module in progress Module locked
Data Management Plans 66379  
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    C - Module overview C - Module overview
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  • Page
    C - 1 Introduction to data management planning C - 1 Introduction to data management planning
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    C - 2 Exercise: Write a DMP (part 1) C - 2 Exercise: Write a DMP (part 1)
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    C - 3 Exercise: Write a DMP (part 2) C - 3 Exercise: Write a DMP (part 2)
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    C - Setup C - Setup
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    C - Module licensing C - Module licensing
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Metadata

Metadata
Module completed Module in progress Module locked
Metadata 66378  
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    D - Module overview D - Module overview
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    D - 1 What is the problem? D - 1 What is the problem?
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    D - 2 Controlled vocabularies & ontologies D - 2 Controlled vocabularies & ontologies
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    D - 3 Metadata standards D - 3 Metadata standards
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    D - 4 Data dictionary D - 4 Data dictionary
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    D - 5 Finding ontologies D - 5 Finding ontologies
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    D - Setup D - Setup
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    D - Module licensing D - Module licensing
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Data organisation practices

Data organisation practices
Module completed Module in progress Module locked
Data organisation practices 66377  
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    E - Module overview E - Module overview
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    E - 1 Data storage and processing E - 1 Data storage and processing
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    E - 2 Organising files and folders E - 2 Organising files and folders
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    E - 3 Structuring tabular data in spreadsheets E - 3 Structuring tabular data in spreadsheets
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    E - 4 Data entry and validation E - 4 Data entry and validation
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    E - 5 Exporting data from spreadsheets E - 5 Exporting data from spreadsheets
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    E - Setup E - Setup
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    E - Module licensing E - Module licensing
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Cleaning tabular data with OpenRefine

Cleaning tabular data with OpenRefine
Module completed Module in progress Module locked
Cleaning tabular data with OpenRefine 66376  
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    F - Module overview F - Module overview
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    F - 1 Introduction F - 1 Introduction
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    F - 2 Working with OpenRefine F - 2 Working with OpenRefine
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    F - 3 Filtering and Sorting with OpenRefine F - 3 Filtering and Sorting with OpenRefine
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    F - 4 Examining Numbers in OpenRefine F - 4 Examining Numbers in OpenRefine
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    F - 5 Using scripts F - 5 Using scripts
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    F - 6 Exporting and Saving Data from OpenRefine F - 6 Exporting and Saving Data from OpenRefine
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    F - 7 Transforming and Selecting a Subset of the Data F - 7 Transforming and Selecting a Subset of the Data
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    F - 8 Other Resources in OpenRefine F - 8 Other Resources in OpenRefine
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    F - Setup F - Setup
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    F - Module licensing F - Module licensing
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Repository submissions

Repository submissions
Module completed Module in progress Module locked
Repository submissions 66375  
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    G - Module overview G - Module overview
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    G - 1 Introduction to repository submission G - 1 Introduction to repository submission
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    G - 2 Exercise - EBI Repository Wizard G - 2 Exercise - EBI Repository Wizard
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    G - 3 How to submit to ENA repository G - 3 How to submit to ENA repository
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    G - 4 Exercise - submission to ENA G - 4 Exercise - submission to ENA
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  • Page
    G - Setup G - Setup
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  • Page
    G - Module licensing G - Module licensing
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Versioning of data and code using Git

Versioning of data and code using Git
Module completed Module in progress Module locked
Versioning of data and code using Git 66659  
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    H - Module overview H - Module overview
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    H - 1 Version control systems H - 1 Version control systems
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    H - 2 Setting up versioning on the web H - 2 Setting up versioning on the web
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    H - 3 Setting up versioning on your computer H - 3 Setting up versioning on your computer
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    H - 4 Collaboration with version control H - 4 Collaboration with version control
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    H - Setup H - Setup
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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    H - Module licensing H - Module licensing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete

Introduction to scripted analysis with R

Introduction to scripted analysis with R
Module completed Module in progress Module locked
Introduction to scripted analysis with R 66799  
  • Page
    I - Module overview I - Module overview
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Page
    I - 1 Introducing R and RStudio IDE I - 1 Introducing R and RStudio IDE
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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    I - 2 R Basics I - 2 R Basics
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Page
    I - 3 R Basics continued - factors and data frames I - 3 R Basics continued - factors and data frames
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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    I - 4 Aggregating and Analyzing Data with dplyr I - 4 Aggregating and Analyzing Data with dplyr
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
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    I - 5 Data Visualization with ggplot2 I - 5 Data Visualization with ggplot2
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Page
    I - 6 Exercises I - 6 Exercises
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  • Page
    I - Setup I - Setup
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Page
    I - Module licensing I - Module licensing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark completed Must mark this module item done in order to complete Marked completed Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
 
minimum score must view must submit must contribute